SHORT DESCRIPTION

A computational tool that safeguards proprietary protein designs by generating biochemically plausible decoy proteins to mislead adversaries.

BACKGROUND

Advances in generative AI have driven breakthroughs in computational protein design for therapeutics, enzymes, and biomaterials. However, proprietary protein designs stored in private databases remain vulnerable to industrial espionage and cyberattacks. Existing solutions fail to fully protect these valuable assets without resorting to expensive wet-lab validations.

ABSTRACT

This invention introduces the FAKEPROTEINGRAPH (FAKEPG) problem, which generates biochemically plausible decoy proteins from an authentic design. The method leverages state-of-the-art protein language models and incorporates adversary-aware generation techniques, ensuring that even knowledgeable attackers face significant hurdles. Experimental evaluations, including an IRB-approved human expert study, demonstrated that automated systems achieved only 8% precision in authentic protein identification, while experts correctly identified authentic proteins in just 6.89% of cases.

APPLICATIONS

• Intellectual property protection: Secures proprietary protein designs against industrial espionage and cyberattacks.

ADVANTAGES

• Deceives automated adversarial detectors: Generates synthetic proteins that evade detection even under adversary-aware conditions.
• Reduces reliance on costly wet-lab validations: Forces adversaries to perform resource-intensive confirmation tests.
• Enhances security: Obscures the identity of authentic designs effectively.
• Scalable computational protection: Utilizes computational power to generate decoys at scale.